Author

Hiroki Kise

University of the RyukyusORCID 0000-0002-4099-6469Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Assay:metagenomics· 2 Research Focus:clustering· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Research Focus:phylogenetics / evolution· 1

Frequent Co-Authors

James Davis ReimeriD· 3 shared ‘Ale’alani DudoitiD· 2 shared Akira IguchiiD· 2 shared Filip HusníkiD· 2 shared Hin Boo WeeiD· 2 shared Maria E. A. SantosiD· 2 shared Masaru MizuyamaiD· 2 shared Robert John TooneniD· 2 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 43 mutual co-author links

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3 shared papersMicrobiology

James Davis ReimerORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Atlantic and Indo-Pacific separation in Palythoa sibling species: phylogenomic analyses using ultraconserved elements

Lara Adele Jacobs Hansen, Maria E. A. Santos, Hiroki Kise, Nuba Zamora-Jordán, James Davis Reimer

This study uses ultraconserved elements to analyze the phylogenetic relationships between Palythoa sibling species, finding intermixed lineages and gene tree discordance, suggesting a species complex rather than distinct species.

bioRxiv · Apr 29, 2026 · PreprintEvolutionary Biology

Shifts in Coral Reef Holobiont Communities in the High-CO2 Marine Environment of Iotorishima Island

Roger Huerlimann, Hin Boo Wee, Marizete da Silva Santos, Hiroki Kise, Masaru Mizuyama, ‘Ale’alani Dudoit, Emmeline A. Jamodiong, Nagi Satoh, Giun Yee Soong, Haruko Kurihara, Robert John Toonen, Filip Husník, Akira Iguchi, Timothy Ravasi, James Davis Reimer

This study examines shifts in holobiont communities of Palythoa tuberculosa under high-pCO2 conditions at Iotorishima Island, finding reduced Symbiodiniaceae diversity and altered bacterial profiles.

PLOS Climate · Jul 3, 2025Peer-reviewedMicrobiology

Coral microbiomes from the Atlantic and Indo-Pacific oceans have the same alpha diversity but different composition

Maria E. A. Santos, James Davis Reimer, Bogdan A. Kiriukhin, Hin Boo Wee, Masaru Mizuyama, Hiroki Kise, Marcelo Visentini Kitahara, Akira Iguchi, ‘Ale’alani Dudoit, Robert John Toonen, Filip Husník

The paper compares coral microbiomes from the Atlantic and Indo-Pacific oceans, finding similar alpha diversity but distinct composition, with implications for symbiont phylogeny and environmental change.

bioRxiv · Aug 16, 2024 · PreprintMicrobiology