Author

Julia C. Engelmann

Utrecht UniversityORCID 0000-0002-4160-5474Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:database / resource· 2 Approach:experimental assay· 2 Assay:metagenomics· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:dimensionality reduction· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

A-S. Andrei· 1 shared A. De Santiago· 1 shared A. M. Gada· 1 shared Alejandro Abdala AsbuniD· 1 shared Aleksandra Petrović FabijaniD· 1 shared Alexander BartholomäusiD· 1 shared Ammar AbdalrahemiD· 1 shared André SoaresiD· 1 shared

Activity by Year

2019-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperMicrobiology

A-S. Andrei

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Author profile →

3 papers

Recent·Most cited

A roadmap for fair reuse of public microbiome data

Laura A. Hug, Roland Hatzenpichler, Cristina Moraru, André Soares, Folker Meyer, Anke Heyder, Rehab Z. Abdallah, Ammar Abdalrahem, Nafi’u Abdulkadir, Ibukun Modupe Adesiyan, Lauren V. Alteio, Karthik Anantharaman, Rika E. Anderson, A-S. Andrei, Juan Antonio Baeza, , Matthew Kellom

The paper proposes a roadmap for fair reuse of public microbiome data by introducing a Data Reuse Information tag (DRI) to facilitate communication between data creators and consumers.

Nature Microbiology · Sep 26, 2025Peer-reviewedMicrobiology

Cascabel: a flexible, scalable and easy-to-use amplicon sequence data analysis pipeline

Alejandro Abdala Asbun, Marc Besseling, Sergio Balzano, Judith D. L. van Bleijswijk, Harry J. Witte, Laura Villanueva, Julia C. Engelmann

Cascabel is a pipeline for analyzing amplicon sequence data, providing OTU tables and sequence trees with customizable steps and scalability.

bioRxiv · Oct 17, 2019 · PreprintBioinformatics

FastqPuri: high-performance preprocessing of RNA-seq data

Paula Pérez-Rubio, Claudio Lottaz, Julia C. Engelmann

FastqPuri is a preprocessing tool for RNA-seq data that improves speed, memory usage, and versatility compared to existing tools.

BMC Bioinformatics · May 3, 2019Peer-reviewedBioinformatics