Gülden Olgun

This study identifies exosomal miRNAs that influence the pre-metastatic niche across multiple cancers, showing their association with survival and chemotherapy response.

miRSCAPE infers miRNA expression from RNA-seq data, showing high accuracy in bulk and single-cell datasets across multiple tissues and cell types.

NoRCE performs cis enrichment analysis for non-coding RNAs by examining nearby coding genes' functional annotations and integrates additional biological data to infer functional associations.

miRCoop identifies synergistic miRNA pairs that induce strong repression on target mRNAs when combined, using kernel-based interaction tests and applies it to kidney tumor data to find 66 putative triplets.

The paper analyzes deregulated long non-coding RNAs in cancer by examining their genomic neighbors and functional enrichment, finding cancer-specific and shared lncRNAs and functional similarities across cancer types.

The paper identifies subtype-specific lncRNA-mediated sponge interactions in breast cancer and shows their prognostic significance.