Author

Suresh Cuddapah

New York UniversityORCID 0000-0002-4556-2029Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Assay:DNA methylation· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Chongzhi ZangiD· 1 shared Cynthia C. Jose· 1 shared Daniel MarriiD· 1 shared David FilipoviciD· 1 shared Edward L. LeCluyseiD· 1 shared Melvin E. AnderseniD· 1 shared Omar Z. KanaiD· 1 shared Sudin BhattacharyaiD· 1 shared

Activity by Year

2019-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperSystems Biology

Chongzhi ZangORCID

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2 papers

Recent·Most cited

Predictive Models of Genome-wide Aryl Hydrocarbon Receptor DNA Binding Reveal Tissue Specific Binding Determinants

David Filipovic, Wenjie Qi, Omar Z. Kana, Daniel Marri, Edward L. LeCluyse, Melvin E. Andersen, Suresh Cuddapah, Sudin Bhattacharya

The paper develops predictive models to identify tissue-specific AhR binding determinants using machine learning on genomic features.

bioRxiv · May 13, 2022 · PreprintGenomics

Nickel induced transcriptional changes persist post exposure through epigenetic reprograming

Cynthia C. Jose, Zhenjia Wang, Vinay Singh Tanwar, Xiaoru Zhang, Chongzhi Zang, Suresh Cuddapah

This study identifies persistent transcriptional and epigenetic changes in human lung epithelial cells after nickel exposure, revealing mechanisms behind long-term health effects.

bioRxiv · Oct 17, 2019 · PreprintSystems Biology