Author

Sumon Ahmed

University of DhakaORCID 0000-0002-4618-5018Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Organism:mouse· 2 Approach:statistical model· 2 Research Focus:differential expression· 1 Research Focus:dimensionality reduction· 1 Organism:human· 1 Organism:rat· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Alexis BoukouvalasiD· 2 shared Magnus RattrayiD· 2 shared James J. HensmaniD· 1 shared Nuha BintayyashiD· 1 shared Sokratia GeorgakaiD· 1 shared St. JohniD· 1 shared

Activity by Year

2018-2021 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 15 mutual co-author links

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2 shared papersBioinformatics

Alexis BoukouvalasORCID

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2 papers

Recent·Most cited

BioinformaticsBioinformaticsPeer-reviewedJun 30, 2021

Non-parametric modelling of temporal and spatial counts data from RNA-seq experiments

Nuha Bintayyash, Sokratia Georgaka, St. John…·Magnus Rattray

The paper introduces GPcounts, a non-parametric method for modeling temporal and spatial counts data in RNA-seq using a negative binomial likelihood, showing improved performance over Gaussian and Poisson models.

48 citations

mousebulk RNA-seq

𝕏 PostBluesky

BioinformaticsBioinformaticsPeer-reviewedJun 28, 2018

GrandPrix: Scaling up the Bayesian GPLVM for single-cell data

Sumon Ahmed, Magnus Rattray, Alexis Boukouvalas

GrandPrix improves the Bayesian GPLVM for single-cell data by scaling it to large datasets and enabling pseudotime inference with branching dynamics.

53 citations

humanmouse

𝕏 PostBluesky