Author
Ontario Institute for Cancer ResearchORCID 0000-0002-4650-631XUnclaimed ORCID profile · follow to get notified of new preprints
6 papers
Recent·Most cited
Guanming Wu, Lisa R. Matthews, Nathan Boyer…·Lincoln David Stein
This paper applies large language models to assist in gene annotation into Reactome pathways, showing promising results in supporting curation workflows.
Marija Orlic-Milacic, Karen Rothfels, Lisa R. Matthews…·Guanming Wu
The paper annotates disease variants in the context of biological pathways to infer molecular phenotypes and model variant impacts.
Krishna Kumar Tiwari, Lisa R. Matthews, Bruce May…·Henning Hermjakob
This paper explores using ChatGPT in Reactome curation to automate pathway annotation, comparing its outputs to manual curation and identifying challenges and improvements.
Adriano Rutz, Maria Sorokina, Jakub Galgonek…·Pierre‐Marie Allard
The paper introduces the LOTUS initiative, which curates and shares 750,000+ structure-organism pairs via Wikidata to improve data interoperability and knowledge management in natural products research.
Marek Ostaszewski, Anna Niarakis, Alexander Mazein…·Özgün Babur
The paper describes the development of a computational knowledge repository, the COVID-19 Disease Map, which curates SARS-CoV-2 virus-host interaction mechanisms and provides tools for their analysis and application.
Andra Waagmeester, Gregory S. Stupp, Sebastian Burgstaller-Muehlbacher…·Andrew I. Su
The paper describes Wikidata as a FAIR knowledge graph for life sciences, showcasing its breadth, tools for integration, and use cases in biomedical analysis.