Krishna Kumar Tiwari

The paper introduces FROG analysis to standardize reproducibility assessments of genome-scale metabolic models, resulting in full reproducibility of all tested models.

The paper annotates disease variants in the context of biological pathways to infer molecular phenotypes and model variant impacts.

This paper explores using ChatGPT in Reactome curation to automate pathway annotation, comparing its outputs to manual curation and identifying challenges and improvements.

The paper investigates reproducibility of systems biology models, finding that 49% of 455 models could not be reproduced due to missing data or inconsistencies.