Author

John R. Spear

Colorado School of MinesORCID 0000-0002-4664-7438Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:database / resource· 1 Research Focus:ecology & biodiversity· 1 Organism:human· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Alexis S. TempletoniD· 1 shared Ben Hillmann· 1 shared Dan KnightsiD· 1 shared Daniel R. ColmaniD· 1 shared Dimitrios N. SidiropoulosiD· 1 shared Eric S. BoydiD· 1 shared Greg Caporaso· 1 shared Jake Larson· 1 shared

Activity by Year

2017-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperMicrobiology

Alexis S. TempletonORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

The Microbial Ecology of Serpentinites

Daniel R. Colman, Alexis S. Templeton, John R. Spear, Eric S. Boyd

This paper reviews the microbial ecology of serpentinite-hosted biospheres and compares metagenomic data to identify global patterns and remaining questions.

The ISME Journal · Jan 1, 2025Peer-reviewedMicrobiology

BugBase Predicts Organism Level Microbiome Phenotypes

Tonya Ward, Jake Larson, Jeremy Meulemans, Ben Hillmann, Joshua K. Lynch, Dimitrios N. Sidiropoulos, John R. Spear, Greg Caporaso, Ran Blekhman, Rob D. Knight, Ryan C. Fink, Dan Knights

BugBase assigns pathway coverage and traits (Gram stain, oxygen tolerance, pathogenicity) to individual taxa in 16S or shotgun microbiome data, detecting some functional differences bag-of-genes profiles miss.

bioRxiv · May 2, 2017 · PreprintBioinformatics✦ In-depth digest