Cong Feng

mirCCC: Repression-aware graph learning for miRNA-mediated cell-cell communication inference

mirCCC infers microRNA-mediated cell-cell communication from single-cell RNA sequencing by detecting coordinated gene expression changes and models miRNA activity and transfer capacity.

AWmeta empowers adaptively-weighted transcriptomic meta-analysis

AWmeta improves transcriptomic meta-analysis by adaptively weighting studies, yielding more accurate differentially expressed genes with fewer samples and reduced false positives.

Systematic single-cell analysis reveals dynamic control of transposable element activity orchestrating the endothelial-to-hematopoietic transition

This study systematically analyzes single-cell data to show how transposable elements dynamically regulate the endothelial-to-hematopoietic transition through epigenetic changes and inflammatory signaling.