Author

Dominika Lewandowska

James Hutton InstituteORCID 0000-0002-4734-2791Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:long-read sequencing· 1 Organism:plant (other)· 1

Frequent Co-Authors

Abdellah BarakateiD· 1 shared Isabelle ColasiD· 1 shared Jamie OrriD· 1 shared Jenny MorrisiD· 1 shared Luke RamsayiD· 1 shared Malcolm A. MacAulayiD· 1 shared Mikel ArrietaiD· 1 shared Miriam SchreiberiD· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperDevelopmental Biology

Abdellah BarakateORCID

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2 papers

Recent·Most cited

ProtView: A versatile tool for in silico protease evaluation and selection in a proteomic and proteogenomic context

Sophia S. Puliasis, Dominika Lewandowska, Piers A. Hemsley, Runxuan Zhang

ProtView evaluates in silico protease digest schemes by mapping peptides to protein and genome references, enabling optimization of proteomic and proteogenomic experiments.

Journal of Proteome Research · May 29, 2023Peer-reviewedBioinformatics

Time-resolved transcriptome of barley anthers and meiocytes reveals robust and largely stable gene expression changes at meiosis entry

Abdellah Barakate, Jamie Orr, Miriam Schreiber, Isabelle Colas, Dominika Lewandowska, Nicola McCallum, Malcolm A. MacAulay, Jenny Morris, Mikel Arrieta, Pete E. Hedley, Luke Ramsay, Robbie Waugh

The paper analyzes RNA-seq data from barley anthers and meiocytes to show that gene expression changes are most significant at meiosis entry, with lncRNAs being downregulated and only 24% of meiotic gene orthologues showing differential expression.

bioRxiv · Apr 20, 2020 · PreprintDevelopmental Biology