Maximum Parsimony Reconciliation in the DTLOR Model
Jingyi Liu, Ross Mawhorter, Nuo Liu, Santi Santichaivekin, Eliot Bush, Ran Libeskind-Hadas
The paper extends the DTL model to account for gene family entry outside the species tree and genomic rearrangements, introducing an efficient algorithm for maximum parsimony reconciliation and preliminary integration into a tool for reconstructing genomic island histories.
BMC Bioinformatics · May 1, 2021Peer-reviewedBioinformatics