Baofeng Jia

The paper analyzes antimicrobial resistance gene mobility across 8000 bacterial species, finding that certain resistance mechanisms are more associated with mobile elements than others.

A uniformly processed set of 2,440,377 bacterial and archaeal genomes with search tools and annotations, plus an AI-mined peptide set yielding ATB20, active in a mouse skin infection model.

The paper identifies sequence and motif similarities between bacterial and human GAD65, suggesting a potential link between gut microbiome dysbiosis and T1D via immune cross-reactivity.

This study shows that short-read MAG binning methods poorly recover plasmids and genomic islands, missing key AMR and VF genes, and recommends using unassembled reads or long-read approaches instead.