Author

Thomas D. Nielsen

Aalborg UniversityORCID 0000-0002-4823-6341Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:metagenomics· 2 Research Focus:benchmarking· 1 Approach:deep learning· 1 Research Focus:genome assembly· 1 Approach:statistical model· 1

Frequent Co-Authors

Katja HoseiD· 2 shared Mads AlbertseniD· 2 shared Mantas SereikaiD· 2 shared André LamúriasiD· 1 shared Jacob NisseniD· 1 shared Jeppe Støtt Bøjer· 1 shared Lucas Nicolaas Ludovic van der MaasiD· 1 shared Ole Thorlacius‐UssingiD· 1 shared

Activity by Year

2022-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Katja HoseORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintApr 29, 2024

Nanomotif: Leveraging DNA Methylation Motifs for Genome Recovery and Host Association of Plasmids in Metagenomes from Complex Microbial Communities

Søren Heidelbach, Sebastian Mølvang Dall, Jeppe Støtt Bøjer…·Mads Albertsen

Nanomotif uses DNA methylation motifs to improve MAG recovery and plasmid host association from metagenomic data.

20 citations

metagenomicsstatistical model

𝕏 PostBluesky

BioinformaticsBioinformaticsPeer-reviewedAug 16, 2022

Metagenomic binning with assembly graph embeddings

André Lamúrias, Mantas Sereika, Mads Albertsen…·Thomas D. Nielsen

This paper introduces GraphMB, a deep learning method for metagenomic binning that integrates assembly graph structures with contig features, improving the number of high-quality genome bins obtained.

63 citationstop 3%

metagenomicsdeep learning

𝕏 PostBluesky