Author

Alina Zare

University of FloridaORCID 0000-0002-4847-7604Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Alina Zare1 paper

Biology Disciplines

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Plant Biology· 2 Bioinformatics· 1 Physiology· 1

Signature Assays, Organisms & Methods

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Assay:imaging· 3 Research Focus:cell type annotation· 2 Approach:deep learning· 2 Approach:experimental assay· 2 Organism:plant (other)· 2 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Hudanyun ShengiD· 2 shared Lucia Acosta‐GamboaiD· 2 shared Malia A. GehaniD· 2 shared Samuel KenneyiD· 2 shared Susan K. MeerdinkiD· 2 shared Adam M. DimechiD· 1 shared Adriane E. ThompsoniD· 1 shared Alexander KutscheraiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersPlant Biology

Hudanyun ShengORCID

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Author profile →

4 papers

Recent·Most cited

PlantCV v4: Image analysis software for high-throughput plant phenotyping

Haley Schuhl, Keely E. Brown, Hudanyun Sheng, Parag K Bhatt, Jorge Gutierrez, Dominik Schneider, Anna L. Casto, Lucia Acosta‐Gamboa, Joe G. Ballenger, Fabio Barbero, Jackson Braley, Autumn Brown, Leonardo Chavez, Shannon S Cunningham, Malinda Dilhara, , Noah Fahlgren

PlantCV v4 improves usability and functionality for plant phenotyping by adding new image types and tutorials for non-coding researchers.

The Plant Phenome Journal · Feb 16, 2026Peer-reviewedPlant Biology

Remote sensing of endogenous pigmentation by inducible synthetic circuits in grasses

Dong‐Yeon Lee, Lucia Acosta‐Gamboa, Luke Saleh, Sunita Pathak, Nathan Swyers, Austin Morgan, Susan K. Meerdink, Caroline Kuzio, Santiago Calderon, Hudanyun Sheng, Samuel Kenney, Alina Zare, Malia A. Gehan, Dmitri A. Nusinow

This paper adapts a ligand-inducible genetic circuit to induce anthocyanin production in the monocot Setaria viridis, enabling non-destructive detection of pigmentation via hyperspectral imaging.

Plant Biotechnology Journal · Dec 5, 2025Peer-reviewedPlant Biology

Estimating soil mineral nitrogen from data-sparse field experiments using crop model-guided machine learning approach

Rishabh Gupta, Satya Krishna Pothapragada, Weihuang Xu, Prateek Kumar Goel, Miguel A. Barrera, Mira S. Saldanha, Joel B. Harley, Kelly T. Morgan, Alina Zare, Lincoln Zotarelli

This paper develops a hybrid model combining crop simulation and deep learning to estimate soil mineral nitrogen from sparse data, improving accuracy over traditional models.

Computers and Electronics in Agriculture · Aug 22, 2024Peer-reviewedPhysiology

Computer vision for assessing species color pattern variation from web-based community science images

Maggie M. Hantak, Robert Guralnick, Alina Zare, Brian J. Stucky

The paper develops a computer vision model to automatically categorize color patterns in community science images, finding striped morphs of salamanders have wider niche breadth.

iScience · Jul 18, 2022Peer-reviewedBioinformatics