Author

Emanuele Paci

University of BolognaORCID 0000-0002-4891-2768Unclaimed ORCID profile · follow to get notified of new preprints

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E. Paci4 papers

Biology Disciplines

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Biophysics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Approach:deep learning· 1 Research Focus:protein folding & dynamics· 1 Assay:protein sequence· 1 Research Focus:protein structure prediction· 1 Assay:proteomics· 1

Frequent Co-Authors

Antonio GrimaldiiD· 1 shared Benjamin M. J. OwensiD· 1 shared Carlo FisicaroiD· 1 shared Falk HoffmanniD· 1 shared G. Radou· 1 shared Istvan Redl· 1 shared J. J. Houwing-Duistermaat· 1 shared Kamil TamiolaiD· 1 shared

Activity by Year

2018-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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1 shared paperBiophysics

Antonio GrimaldiORCID

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3 papers

Recent·Most cited

Intrinsic Hydrogen Deuterium Exchange Rates in H2O/D2O Mixtures

Antonio Grimaldi, Michele Stofella, Emanuele Paci

The paper presents a method to predict intrinsic forward and reverse amide exchange rates in H2O/D2O mixtures, accounting for solvent composition and acidity.

The Journal of Physical Chemistry B · Feb 18, 2026Peer-reviewedBiophysics

ADOPT: intrinsic protein disorder prediction through deep bidirectional transformers

Istvan Redl, Carlo Fisicaro, Oliver Dutton, Falk Hoffmann, Louie D. Henderson, Benjamin M. J. Owens, Matthew M. Heberling, Emanuele Paci, Kamil Tamiola

ADOPT predicts protein intrinsic disorder using a deep bidirectional transformer, outperforming existing methods in speed and accuracy.

NAR Genomics and Bioinformatics · Mar 29, 2023Peer-reviewedBioinformatics

Hydrogen exchange protection factors can be extracted from sparse HDX-MS data

S. Skinner, G. Radou, R. Tuma, J. J. Houwing-Duistermaat, E. Paci

This paper shows that protection factors from hydrogen exchange mass spectrometry can be predicted from sparse time-resolved data, providing constraints for structure and interaction analysis.

bioRxiv · Sep 4, 2018 · PreprintBiophysics