Author

Alexander Lim

Oklahoma State UniversityORCID 0000-0002-5115-8567Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Approach:experimental assay· 1 Assay:long-read sequencing· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Research Focus:variant effect prediction· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Bryan NaidenoviD· 2 shared Charles CheniD· 2 shared Akhilesh Ramachandran· 1 shared Haley Bates· 1 shared Hong Jin HwangiD· 1 shared John E. GustafsoniD· 1 shared Karyn L. Willyerd· 1 shared Karyn Willyerd· 1 shared

Activity by Year

2018-2019 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersBioinformatics

Bryan NaidenovORCID

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2 papers

Recent·Most cited

Pan-genomic and Polymorphic Driven Prediction of Antibiotic Resistance in Elizabethkingia

Bryan Naidenov, Karyn L. Willyerd, Alexander Lim, Nathanial J. Torres, William L Johnson, Hong Jin Hwang, Peter R. Hoyt, John E. Gustafson, Charles Chen

The paper predicts antibiotic resistance in Elizabethkingia using pan-genomic analysis and machine learning, achieving high F1 scores for clindamycin and vancomycin resistance.

Frontiers in Microbiology · Jul 4, 2019Peer-reviewedBioinformatics

Genomic Surveillance for Antimicrobial Resistance in Mannheimia haemolytica Using Nanopore Single Molecule Sequencing Technology

Alexander Lim, Bryan Naidenov, Haley Bates, Karyn Willyerd, Timothy Snider, Matthew Brian Couger, Charles Chen, Akhilesh Ramachandran

The paper uses nanopore sequencing to identify antimicrobial resistance genes in Mannheimia haemolytica strains and validates their resistance phenotypes.

bioRxiv · Aug 19, 2018 · PreprintMicrobiology