Author

Zidian Xie

University of Rochester MedicineORCID 0000-0002-5149-7710Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:differential expression· 2 Organism:Arabidopsis· 1 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:development & morphogenesis· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Carl Collins· 1 shared David Newman· 1 shared Dongmei LiiD· 1 shared Erich GrotewoldiD· 1 shared Eunkyoung LeeiD· 1 shared Farah PatelliD· 1 shared Irfan RahmaniD· 1 shared James A.H. MurrayiD· 1 shared

Activity by Year

2017-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperPlant Biology

Carl Collins

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

An evaluation of RNA-seq differential analysis methods

Dongmei Li, Martin Stuart Zand, Timothy Dye, Maciej Lukasz Goniewicz, Irfan Rahman, Zidian Xie

The paper evaluates RNA-seq differential analysis methods across simulated and real data, finding EBSeq and DESeq2 perform best under specific conditions.

PLoS ONE · Sep 16, 2022Peer-reviewedBioinformatics

Stimulation of the final cell cycle in the stomatal lineage by the cyclin CYCD7;1 under regulation of the MYB transcription factor FOUR-LIPS

Farah Patell, David Newman, Eunkyoung Lee, Zidian Xie, Carl Collins, Erich Grotewold, James A.H. Murray, Walter Dewitte

The paper shows that CYCD7;1, regulated by FOUR-LIPS/MYB88, drives the final symmetric division in the Arabidopsis stomatal lineage.

bioRxiv · Oct 23, 2017 · PreprintPlant Biology