Author

Ayush Kumar

University of Massachusetts Chan Medical SchoolORCID 0000-0002-5174-9906Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Approach:statistical model· 1

Frequent Co-Authors

Athma A. PaiiD· 1 shared Eraj Shafiq KhokhariD· 1 shared Jonathan K. WattsiD· 1 shared Kaitlyn BrokawiD· 1 shared Nida Javeed· 1 shared Valeria C. SanabriaiD· 1 shared Zachary J. KartjeiD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

Co-Author Collaboration Network

7 top collaborators · 21 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperGenomics

Athma A. PaiORCID

Mutual co-authors in cluster

Author profile →

1 paper

Recent·Most cited

Pervasive noise in human splice site selection

Eraj Shafiq Khokhar, Kaitlyn Brokaw, Zachary J. Kartje, Valeria C. Sanabria, Nida Javeed, Ayush Kumar, Jonathan K. Watts, Athma A. Pai

The paper tracks splicing intermediates in human cells using ultra-deep sequencing and finds pervasive usage of low-fidelity splice sites associated with genomic features that promote splicing noise.

bioRxiv · Jul 16, 2025 · PreprintGenomics