Author

Jayson Harshbarger

RIKENORCID 0000-0002-5188-2045Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Organism:human· 2 Approach:machine learning (classical)· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1

Frequent Co-Authors

Mickaël MendeziD· 2 shared Aditi KanhereiD· 1 shared Aki MinodaiD· 1 shared Akira HasegawaiD· 1 shared Albin SandeliniD· 1 shared Alessandro BonettiiD· 1 shared Alexander V. FavoroviD· 1 shared Alexandre Fort· 1 shared

Activity by Year

2020-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Mickaël MendezORCID

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2 papers

Recent·Most cited

Automated identification of cell-type-specific genes and alternative promoters

Mickaël Mendez, Jayson Harshbarger, Michael M. Hoffman

This paper introduces CLA, a method to identify cell-type-specific genes and alternative promoters by integrating Cell Ontology and random forest classification with stratified bootstrapping.

bioRxiv · Dec 1, 2021 · PreprintBioinformatics

Functional Annotation of Human Long Non-Coding RNAs via Molecular Phenotyping

Jordan A. Ramilowski, Chi Wai Yip, Saumya Agrawal, Jen-Chien Chang, Yari Ciani, Ivan V. Kulakovskiy, Mickaël Mendez, Jasmine Li Ching Ooi, John F. Ouyang, Nick Parkinson, Andreas Petri, Leonie Roos, Jessica Severin, Kayoko Yasuzawa, Imad Abugessaisa, , Chinatsu Yamamoto

The paper functionally annotates human long non-coding RNAs by systematically knocking down 285 lncRNAs and analyzing molecular phenotypes using CAGE sequencing.

Genome Research · Jul 1, 2020Peer-reviewedGenomics