Author

Alexandre Fort

RIKEN

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Organism:human· 2 Research Focus:differential expression· 1 Research Focus:eQTL / molecular QTL mapping· 1 Research Focus:gene regulatory network inference· 1 Assay:Hi-C· 1 Research Focus:spatial domain detection· 1

Frequent Co-Authors

Hideya KawajiiD· 2 shared Tetsuro HiroseiD· 2 shared Valerio OrlandoiD· 2 shared Aditi KanhereiD· 1 shared Aki MinodaiD· 1 shared Akira HasegawaiD· 1 shared Albin SandeliniD· 1 shared Alessandro BonettiiD· 1 shared

Activity by Year

2017-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenomics

Hideya KawajiORCID

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3 papers

Recent·Most cited

Functional Annotation of Human Long Non-Coding RNAs via Molecular Phenotyping

Jordan A. Ramilowski, Chi Wai Yip, Saumya Agrawal, Jen-Chien Chang, Yari Ciani, Ivan V. Kulakovskiy, Mickaël Mendez, Jasmine Li Ching Ooi, John F. Ouyang, Nick Parkinson, Andreas Petri, Leonie Roos, Jessica Severin, Kayoko Yasuzawa, Imad Abugessaisa, , Chinatsu Yamamoto

The paper functionally annotates human long non-coding RNAs by systematically knocking down 285 lncRNAs and analyzing molecular phenotypes using CAGE sequencing.

Genome Research · Jul 1, 2020Peer-reviewedGenomics

AGO1 in association with NEAT1 lncRNA contributes to nuclear and 3D chromatin architecture in human cells

Muhammad Shuaib, Krishna Mohan Parsi, Hideya Kawaji, Manjula Thimma, Sabir Abdu Adroub, Alexandre Fort, Yanal Ghosheh, Tomohiro Yamazaki, Taro Mannen, Loqmane Seridi, Bodor Fallatah, Waad Albawardi, Timothy Ravasi, Piero Carninci, Tetsuro Hirose, Valerio Orlando

This study shows AGO1 and NEAT1 lncRNA maintain 3D chromatin architecture by regulating TADs and A/B compartments in human cells.

bioRxiv · Jan 20, 2019 · PreprintGenomics

A complete tool set for molecular QTL discovery and analysis

Olivier Delaneau, Halit Ongen, Andrew Anand Brown, Alexandre Fort, Nikolaos Panousis, Emmanouil Dermitzakis

QTLtools is a modular framework for molecular QTL discovery and analysis, integrating data preparation, molQTL detection, and GWAS variant integration.

Nature Communications · May 18, 2017Peer-reviewedBioinformatics