Author

Sarthak Pathak

Shibaura Institute of TechnologyORCID 0000-0002-5271-1782Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioengineering· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Organism:bacteria (other)· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Assay:fluorescence / live-cell microscopy· 1

Frequent Co-Authors

Alessandro MoroiD· 1 shared Geshani C. BandaraiD· 1 shared Hiroaki SuzukiiD· 1 shared Kazunori UmedaiD· 1 shared Keiichiro KoiwaiiD· 1 shared Ryann D. Boudreau· 1 shared Steven R. CaliariiD· 1 shared Yuki FujitaiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

9 top collaborators · 18 mutual co-author links

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1 shared paperMicrobiology

Alessandro MoroORCID

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2 papers

Recent·Most cited

Aligned basement membrane-modified collagen scaffolds for skeletal muscle tissue engineering

Ryann D. Boudreau, Geshani C. Bandara, Sarthak Pathak, Steven R. Caliari

This study develops collagen-glycosaminoglycan scaffolds with aligned pores and basement membrane proteins to enhance skeletal muscle tissue engineering.

bioRxiv · Jul 13, 2026 · PreprintBioengineering

Optical flow reveals motility signatures for inferring pathogenic bacterial mixture compositions via temporal convolutional networks

Yuki Fujita, Yuki Nagase, Sarthak Pathak, Alessandro Moro, Hiroaki Suzuki, Keiichiro Koiwai, Kazunori Umeda

The paper uses temporal convolutional networks to classify bacterial mixture compositions from motion features in microscopy videos, achieving 93.3% accuracy without fluorescent labeling.

bioRxiv · Jun 29, 2026 · PreprintMicrobiology