Author

Kasper Skytte Andersen

Aalborg UniversityORCID 0000-0002-5423-0958Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:metagenomics· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:dimensionality reduction· 1 Assay:long-read sequencing· 1 Research Focus:software / tool· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Rasmus Hansen KirkegaardiD· 3 shared Marie Riisgaard-JenseniD· 2 shared Morten Simonsen DueholmiD· 2 shared Albert Vejlin Stefansen· 1 shared Chenjing JiangiD· 1 shared Heng LiiD· 1 shared Jakob Holm Dalsgaard ThomseniD· 1 shared Jim ShawiD· 1 shared

Activity by Year

2018-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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3 shared papersBioinformatics

Rasmus Hansen KirkegaardORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintMay 29, 2026

Sensitive long-read amplicon sequence variant recovery with savont

Jim Shaw, Marie Riisgaard-Jensen, Kasper Skytte Andersen…·Heng Li

Savont improves ASV recovery from long-read amplicon sequencing with high accuracy and lower sequencing depth.

1 citation

long-read sequencingstatistical model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintFeb 28, 2026

Nanopore sequencing reaches amplicon sequence variant (ASV) resolution

Marie Riisgaard-Jensen, Stefania Andrea Rosso Villanelo, Kasper Skytte Andersen…·Morten Simonsen Dueholm

This study shows that Oxford Nanopore Technologies can generate amplicon sequence variants (ASVs) directly from raw reads, enabling high-resolution microbial community profiling without reliance on reference databases.

2 citations

metagenomicsstatistical model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintApr 11, 2018

✦ In-depth digest

ampvis2: an R package to analyse and visualise 16S rRNA amplicon data

Kasper Skytte Andersen, Rasmus Hansen Kirkegaard, Søren Michael Karst, Mads Albertsen

ampvis2 unifies 16S amplicon count tables, taxonomy, and sample metadata in one R object, feeding ggplot2 heatmaps at any taxonomic rank and single-call ordination (seven methods).

731 citations

bacteria (other)metagenomics

𝕏 PostBluesky