Author

Jinxi Xiang

Stanford MedicineORCID 0000-0002-5476-3690Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Organism:human· 2 Assay:spatial transcriptomics· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Approach:deep learning· 1 Assay:perturbation screen· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Siyu HouiD· 2 shared Hui Wan· 1 shared Jade Xiaoqing WangiD· 1 shared Jun ZhangiD· 1 shared Kuan TianiD· 1 shared Penghui YangiD· 1 shared Sen YangiD· 1 shared Wei YangiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBioinformatics

Siyu HouORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintSep 2, 2026

✦ In-depth digest

Accessible and reproducible deployment reveals the practical boundaries of single-cell foundation models

Siyu Hou, Penghui Yang, Wenjing Ma…·Xiang Zhou

Across 13 single-cell foundation models and 94 datasets, PCA and established methods usually match or beat them; pretrained embeddings help mainly with scarce labels, rare cells and open-set detection.

1 citation

humanscRNA-seq

𝕏 PostBluesky

BioinformaticsbioRxivPreprintOct 13, 2022

St2cell: Reconstruction of in situ single-cell spatial transcriptomics by integrating high-resolution histological image.

Siyu Hou, Kuan Tian, Sen Yang…·Xiao Han

St2cell reconstructs in situ single-cell spatial transcriptomics by integrating high-resolution histological images with deep learning and convex quadratic programming.

4 citations

humanspatial transcriptomics

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