Author

Doruk Efe Gökmen

U.S. National Science FoundationORCID 0000-0002-5536-1941Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:dimensionality reduction· 1 Assay:DNA methylation· 1 Organism:E. coli· 1 Assay:electronic health records· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Organism:mouse· 1

Frequent Co-Authors

Vincenzo VitelliiD· 2 shared Brent DoironiD· 1 shared Hernan G. GarciaiD· 1 shared Michel Fruchart· 1 shared Rob PhillipsiD· 1 shared Rosalind Wenshan PaniD· 1 shared Sihan CheniD· 1 shared Stephen R. QuakeiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersNeuroscience

Vincenzo VitelliORCID

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2 papers

Recent·Most cited

Spontaneous brain-wide rotational dynamics constrain cue-evoked behavior

Sihan Chen, Yunlong Xu, Doruk Efe Gökmen, Michel Fruchart, Brent Doiron, Vincenzo Vitelli

This paper introduces Rotational Component Analysis (RCA) to detect low-dimensional rotational dynamics in neural data and shows these dynamics constrain cue-evoked behavior and learning across species.

bioRxiv · Oct 21, 2026 · PreprintNeuroscience

Informational blueprints reveal condition-dependent gene regulatory architectures

Doruk Efe Gökmen, Rosalind Wenshan Pan, Tom Röschinger, Stephen R. Quake, Hernan G. Garcia, Rob Phillips, Vincenzo Vitelli

The paper introduces an algorithm to identify condition-dependent transcription factor binding sites by compressing promoter sequences into hyperletters, validated on E. coli data.

bioRxiv · May 20, 2026 · PreprintGenomics