Author

Madara Hetti Arachchilage

University of Illinois Urbana-ChampaignORCID 0000-0002-5637-922XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Plant Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:gene regulatory network inference· 2 Organism:plant (other)· 2 Approach:statistical model· 2

Frequent Co-Authors

Amy Marshall‐ColóniD· 2 shared John E. MulletiD· 2 shared Brandon T. JamesiD· 1 shared Brian Adam McKinleyiD· 1 shared Evan KurtziD· 1 shared Jie FuiD· 1 shared Kankshita SwaminathaniD· 1 shared Kerrie BarryiD· 1 shared

Activity by Year

2020-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersPlant Biology

Amy Marshall‐ColónORCID

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2 papers

Recent·Most cited

Plant BiologyBMC Plant BiologyPeer-reviewedOct 1, 2025

Stage-resolved gene regulatory network analysis reveals developmental reprogramming and genes with robust stem-preferred expression in sorghum

Jie Fu, Brandon T. James, Madara Hetti Arachchilage…·Amy Marshall‐Colón

The paper analyzes RNA-seq data to identify stem-preferred genes and regulatory networks in sorghum, finding two validated transcription factors involved in stem development.

3 citations

plant (other)bulk RNA-seq

𝕏 PostBluesky

Systems BiologybioRxivPreprintJun 17, 2020

Sorghum bicolor cultivars have divergent and dynamic gene regulatory networks that control the temporal expression of genes in stem tissue

Madara Hetti Arachchilage, John E. Mullet, Amy Marshall‐Colón

The paper identifies stem-specific genes and their regulatory networks in sorghum cultivars, revealing temporal expression patterns and genetic variation in regulatory elements between varieties.

6 citations

plant (other)bulk RNA-seq

𝕏 PostBluesky