Author

Xi Ran Cheng

Nanjing University of Science and TechnologyORCID 0000-0002-5669-7092Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:protein sequence· 2 Organism:bacteria (other)· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Organism:plant (other)· 1 Approach:statistical model· 1

Frequent Co-Authors

Aaron P. WhiteiD· 1 shared Chao WangiD· 1 shared Di ZhangiD· 1 shared Guohua Fan· 1 shared Panrong Wu· 1 shared Xinjie HuiiD· 1 shared Yang ZhaoiD· 1 shared Yejun WangiD· 1 shared

Activity by Year

2016-2018 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperBioinformatics

Aaron P. WhiteORCID

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2 papers

Recent·Most cited

CSTDB: A Crop Stress-tolerance Gene and Protein Database Integrated by Convolutional Neural Networks

Di Zhang, Yi Yue, Yang Zhao, Chao Wang, Xi Ran Cheng, Ying Wu, Guohua Fan, Panrong Wu, Yujia Gao, Youhua Zhang, Yunzhi Wu

CSTDB is a crop stress-tolerance gene and protein database built using convolutional neural networks, providing information on abiotic and biotic stress-related genes and proteins for major crops.

bioRxiv · Oct 29, 2018 · PreprintBioinformatics

Identification of new bacterial type III secreted effectors with a recursive Hidden Markov Model profile-alignment strategy

Xi Ran Cheng, Xinjie Hui, Aaron P. White, Zhirong Guo, Yueming Hu, Yejun Wang

The paper introduces a recursive Hidden Markov Model profile-alignment strategy to identify new bacterial type III secreted effectors, finding 155 effectors and 59 proteins with N-terminal signal sequences across 27 genera.

bioRxiv · Oct 16, 2016 · PreprintBioinformatics