Author

Xinjie Hui

Capital Medical UniversityORCID 0000-0002-7048-9505Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 2 Approach:statistical model· 2 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:gene regulatory network inference· 1 Assay:protein sequence· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Aaron P. WhiteiD· 2 shared Yejun WangiD· 2 shared Yueming HuiD· 2 shared Akosiererem S. SokariboiD· 1 shared Guoqiang ZhuiD· 1 shared Hongxia Bao· 1 shared Junya Zhang· 1 shared Ming-an SuniD· 1 shared

Activity by Year

2016-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersMicrobiology

Aaron P. WhiteORCID

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2 papers

Recent·Most cited

Evolution of Salmonella Chromosomes and Its Influence on Gene Expression and Chromosomal Conformation

Yueming Hu, Zewei Chen, Akosiererem S. Sokaribo, Ziyi Zhao, Xin Cao, Junya Zhang, Shuhong Liu, Runhong Chen, Yuping Deng, Hongxia Bao, Xinjie Hui, Ming-an Sun, Guoqiang Zhu, Shulin Liu, Aaron P. White, Yejun Wang

This study reconstructs ancient Salmonella chromosomes and shows genetic rearrangements affect gene expression and chromosomal conformation across lineages.

bioRxiv · Dec 10, 2024 · PreprintMicrobiology

Identification of new bacterial type III secreted effectors with a recursive Hidden Markov Model profile-alignment strategy

Xi Ran Cheng, Xinjie Hui, Aaron P. White, Zhirong Guo, Yueming Hu, Yejun Wang

The paper introduces a recursive Hidden Markov Model profile-alignment strategy to identify new bacterial type III secreted effectors, finding 155 effectors and 59 proteins with N-terminal signal sequences across 27 genera.

bioRxiv · Oct 16, 2016 · PreprintBioinformatics