Author

Somayeh Kafaie

Dalhousie UniversityORCID 0000-0002-5685-6487Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Approach:graph neural network· 1 Assay:metagenomics· 1 Assay:proteomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Aravind IyeriD· 1 shared David Burke James MahoneyiD· 1 shared Enayat RajabiiD· 1 shared Finlay MaguireiD· 1 shared Robert Gerald BeikoiD· 1 shared Shahlla Naseri· 1 shared Travis GagieiD· 1 shared Yusuff Kazeem· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

8 top collaborators · 13 mutual co-author links

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1 shared paperBioinformatics

Aravind IyerORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

Sarand: Exploring Antimicrobial Resistance Gene Neighborhoods in Complex Metagenomic Assembly Graphs

Somayeh Kafaie, Shahlla Naseri, David Burke James Mahoney, Travis Gagie, Robert Gerald Beiko, Finlay Maguire

Sarand extracts AMR gene contexts from metagenomic assembly graphs, improving precision and sensitivity over existing methods.

NAR Genomics and Bioinformatics · Jun 27, 2026Peer-reviewedBioinformatics

BRIDGE: Biological Antimicrobial Resistance Inference via Domain-Knowledge Graph Embeddings

Aravind Iyer, Yusuff Kazeem, Somayeh Kafaie, Enayat Rajabi

BRIDGE improves antimicrobial resistance gene prediction by integrating gene neighbourhood and protein-protein interaction data, achieving 97% classification accuracy.

bioRxiv · Feb 11, 2026 · PreprintBioinformatics