Author

David Dreifuss

SIB Swiss Institute of BioinformaticsORCID 0000-0002-5827-5387Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Approach:simulation· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Ivan TopolskyiD· 2 shared Kim Philipp JablonskiiD· 2 shared Lara FuhrmanniD· 2 shared Niko BeerenwinkeliD· 2 shared Pelin Icer BaykaliD· 2 shared Aashil A. BataviaiD· 1 shared Abayomi S. OlabodeiD· 1 shared Alexandre DefelicibusiD· 1 shared

Activity by Year

2024-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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2 shared papersBioinformatics

Ivan TopolskyORCID

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2 papers

Recent·Most cited

BioinformaticsMicrobial GenomicsPeer-reviewedMay 24, 2024

Tracking SARS-CoV-2 variants of concern in wastewater: an assessment of nine computational tools using simulated genomic data

Steven G. Sutcliffe, Susanne A. Kraemer, Isaac Ellmen…·B. Jesse Shapiro

The paper evaluates nine computational tools for identifying SARS-CoV-2 lineages in wastewater sequencing data using simulated samples, finding most tools reliably detect lineages above 5% frequency.

19 citationstop 2%

whole-genome sequencingsimulation

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BioinformaticsGigaSciencePeer-reviewedJan 1, 2024

V-pipe 3.0: a sustainable pipeline for within-sample viral genetic diversity estimation

Lara Fuhrmann, Kim Philipp Jablonski, Ivan Topolsky…·Niko Beerenwinkel

V-pipe 3.0 is a computational pipeline for analyzing viral genomic data, enabling reproducible and scalable estimation of within-sample genetic diversity.

21 citations

whole-genome sequencingexperimental assay

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