Author

Rui Borges

University of Veterinary Medicine ViennaORCID 0000-0002-5905-3778Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genetics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:whole-genome sequencing· 3 Research Focus:phylogenetics / evolution· 2 Research Focus:variant effect prediction· 2 Approach:Bayesian inference· 1 Approach:benchmark study· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Carolin KosioliD· 2 shared Angie S. HinrichsiD· 1 shared Bastien BoussauiD· 1 shared Bryan P. ThornlowiD· 1 shared Conor R. WalkeriD· 1 shared David H. HaussleriD· 1 shared Gergely J. SzöllősiiD· 1 shared Greg SlodkowicziD· 1 shared

Activity by Year

2019-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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2 shared papersBioinformatics

Carolin KosiolORCID

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3 papers

Recent·Most cited

BioinformaticsMethods in Ecology and EvolutionPeer-reviewedSep 22, 2022

Polymorphism-aware estimation of species trees and evolutionary forces from genomic sequences with RevBayes

Rui Borges, Bastien Boussau, Sebastian Höhna…·Carolin Kosiol

The paper introduces PoMos, a polymorphism-aware method for species tree estimation and evolutionary force analysis using RevBayes, finding mutation and selection biases in grasshopper phylogeny.

9 citations

multiple specieswhole-genome sequencing

𝕏 PostBluesky

GenomicsPLoS GeneticsPeer-reviewedNov 18, 2020

Stability of SARS-CoV-2 Phylogenies

Yatish Turakhia, Nicola De Maio, Bryan P. Thornlow…·Russell B Corbett-Detig

The paper identifies lab-specific recurrent mutations in SARS-CoV-2 sequences that affect phylogenetic inference and proposes tools to improve sequence quality and phylogeny comparison.

113 citationstop 5%

viruswhole-genome sequencing

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GeneticsGeneticsPeer-reviewedMay 30, 2019

Quantifying GC-biased gene conversion in great ape genomes using polymorphism-aware models

Rui Borges, Gergely J. Szöllősi, Carolin Kosiol

The paper quantifies GC-biased gene conversion in great ape genomes using a new polymorphism-aware model that accounts for allelic selection and demography.

33 citations

humanwhole-genome sequencing

𝕏 PostBluesky