Sepideh Babaei

Transcriptomic analysis of organotypic porcine retina cultures

This study provides a time-resolved transcriptomic reference for porcine retinal explants cultured ex vivo, revealing gene expression changes and biological processes over 10 days.

S3-CIMA: Supervised spatial single-cell image analysis for the identification of disease-associated cell type compositions in tissue

Integrative Analysis Reveals a Molecular Stratification of Systemic Autoimmune Diseases

The paper identifies four molecular clusters in systemic autoimmune diseases using transcriptome and methylome data, showing three stable aberrant patterns and one non-specific cluster.