Author

Catherine Rivoire

SIB Swiss Institute of BioinformaticsORCID 0000-0002-5979-8382Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:dimensionality reduction· 1 Assay:protein sequence· 1 Assay:proteomics· 1

Frequent Co-Authors

Alan James BridgeiD· 2 shared Andrea H AuchinclossiD· 2 shared Beatrice CucheiD· 2 shared Chantal HuloiD· 2 shared Delphine BaratiniD· 2 shared Edouard de CastroiD· 2 shared Elisabeth CoudertiD· 2 shared Ivo PedruzziiD· 2 shared

Activity by Year

2020-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Alan James BridgeORCID

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2 papers

Recent·Most cited

Annotation of biologically relevant ligands in UniProtKB using ChEBI

Elisabeth Coudert, Sébastien Géhant, Edouard de Castro, Monica Pozzato, Delphine Baratin, Teresa Batista Neto, Christian J A Sigrist, Nicole Redaschi, Alan James Bridge, Lucila Aimo, Ghislaine Argoud‐Puy, Andrea H Auchincloss, Kristian B. Axelsen, Parit Bansal, Teresa M Batista Neto, , Elena Speretta

The paper reannotates ligand binding sites in UniProtKB using ChEBI identifiers and improves search facilities for these annotations.

Bioinformatics · Dec 9, 2022Peer-reviewedBioinformatics

HAMAP rules as SPARQL - A portable annotation pipeline for genomes and proteomes

Jerven Tjalling Bolleman, Edouard de Castro, Delphine Baratin, Sébastien Géhant, Beatrice Cuche, Andrea H Auchincloss, Elisabeth Coudert, Chantal Hulo, Patrick Masson, Ivo Pedruzzi, Catherine Rivoire, Ioannis Xénarios, Nicole Redaschi, Alan James Bridge

The paper translates HAMAP proteome annotation rules into SPARQL queries for reusable genome and proteome annotation across different datasets.

GigaScience · Feb 1, 2020Peer-reviewedBioinformatics