Julia Elisabeth Vogt

Large-scale, interpretable gene regulatory network inference through biologically informed matrix factorization

This paper introduces Giraffe, a matrix factorization method for gene regulatory network inference that estimates signed regulatory effects, showing improved accuracy in distinguishing activating and inhibitory interactions across multiple biological contexts.

A Bayesian Nonparametric Approach to Discover Clinico-Genetic Associations across Cancer Types

This paper introduces a Bayesian nonparametric method to find genetic-clinical associations across cancer types, showing it recovers known associations and outperforms classical methods.