Author

Anna Tarakanova

University of ConnecticutORCID 0000-0002-6093-031XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Organism:human· 1 Organism:mouse· 1 Organism:multiple species· 1 Assay:protein sequence· 1

Frequent Co-Authors

Mohammad MadaniiD· 2 shared Alexandra MalyginaiD· 1 shared Anna Ponomareva· 1 shared D. Smirnov· 1 shared Debra ToiberiD· 1 shared Dongjin Song· 1 shared Ekaterina E. KhrameevaiD· 1 shared Ekaterina Kashuk· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersBioinformatics

Mohammad MadaniORCID

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Author profile →

3 papers

Recent·Most cited

A systematic evaluation of SIRT6 as transcriptomic biomarker of aging

Ekaterina Kashuk, Anna Tarakanova, Alexandra Malygina, Nadezhda Kuzovkina, Anna Ponomareva, Debra Toiber, Ekaterina E. Khrameeva, D. Smirnov

This study evaluates SIRT6 as an aging biomarker by analyzing transcriptomic data across species and identifies context-dependent dysregulation in Alzheimer's disease.

bioRxiv · Sep 7, 2026 · PreprintBioinformatics

CGAN-Cmap: protein contact map prediction using deep generative adversarial neural networks

Mohammad Madani, Mohammad Mahdi Behzadi, Dongjin Song, Horea T. Ilieş, Anna Tarakanova

CGAN-Cmap improves protein contact map prediction using a hybrid deep learning model, achieving higher accuracy for medium and long-range contacts and reducing reliance on homologous sequences.

bioRxiv · Jul 26, 2022 · PreprintBioinformatics

DSResSol: A sequence-based solubility predictor created with Dilated Squeeze Excitation Residual Networks

Mohammad Madani, Kaixiang Lin, Anna Tarakanova

DSResSol is a deep learning model that predicts protein solubility from sequence, outperforming existing methods by 5-13% in accuracy and identifying key amino acids contributing to solubility.

International Journal of Molecular Sciences · Dec 17, 2021Peer-reviewedBioinformatics