Author

Emma Pierson

Stanford UniversityORCID 0000-0002-6149-5567Unclaimed ORCID profile · follow to get notified of new preprints

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Emma Pierson2 papers

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Research Focus:dimensionality reduction· 3 Research Focus:benchmarking· 2 Research Focus:clustering· 2 Approach:machine learning (classical)· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Assay:ChIP-seq· 1 Approach:deep learning· 1

Frequent Co-Authors

Bo WangiD· 2 shared Daniele RamazzottiiD· 2 shared Junjie ZhuiD· 2 shared Serafim BatzoglouiD· 2 shared Anshul Bharat KundajeiD· 1 shared Luca De Sano· 1 shared Pang Wei KohiD· 1 shared

Activity by Year

2017-2017 · peak 3/yr

Co-Author Collaboration Network

7 top collaborators · 11 mutual co-author links

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2 shared papersBioinformatics

Bo WangORCID

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3 papers

Recent·Most cited

BioinformaticsPROTEOMICSPeer-reviewedDec 19, 2017

SIMLR: A Tool For Large-Scale Single-Cell Analysis By Multi-Kernel Learning

Bo Wang, Daniele Ramazzotti, Luca De Sano…·Serafim Batzoglou

SIMLR is a tool for single-cell RNA-seq analysis that improves clustering and visualization through multi-kernel learning.

130 citationstop 4%

scRNA-seqmachine learning (classical)

𝕏 PostBluesky

BioinformaticsBioinformaticsPeer-reviewedApr 17, 2017

Denoising genome-wide histone ChIP-seq with convolutional neural networks

Pang Wei Koh, Emma Pierson, Anshul Bharat Kundaje

The paper introduces a convolutional denoising algorithm, Coda, to improve histone ChIP-seq data quality by learning to map suboptimal to high-quality data.

59 citations

ChIP-seqdeep learning

𝕏 PostBluesky

BioinformaticsNature MethodsPeer-reviewedMar 6, 2017

Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning

Bo Wang, Junjie Zhu, Emma Pierson…·Serafim Batzoglou

This paper introduces SIMLR, a similarity-learning framework for single-cell RNA-seq data analysis, showing improved clustering and visualization.

706 citationstop 1%

scRNA-seqstatistical model

𝕏 PostBluesky