Author

Shihua Zhou

Dalian UniversityORCID 0000-0002-6246-5116Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:DNA methylation· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Approach:contrastive learning· 1 Approach:deep learning· 1 Research Focus:sequence-to-function modeling· 1

Frequent Co-Authors

Ben CaoiD· 2 shared Pan ZhengiD· 2 shared Bin WangiD· 1 shared Bin WangiD· 1 shared Jiadong WangiD· 1 shared Lei XieiD· 1 shared Qiang ZhangiD· 1 shared Wei Li· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Ben CaoORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

BioinformaticsJournal of Chemical Information and ModelingPeer-reviewedJan 13, 2026

DNACSE: Enhancing Genomic LLMs with Contrastive Learning for DNA Barcode Identification

Jiadong Wang, Bin Wang, Shihua Zhou…·Pan Zheng

DNACSE improves DNA barcode identification by fine-tuning DNA language models with contrastive learning, achieving higher accuracy and clustering performance than existing methods.

8 citationstop 1%

DNA methylationwhole-genome sequencing

𝕏 PostBluesky

GenomicsbioRxivPreprintAug 5, 2025

DNA Sequence Trace Reconstruction Using Deep Learning

Ben Cao, Lei Xie, Zhiqiang Liu…·Qiang Zhang

DNARetrace reconstructs DNA sequences from raw data using a deep learning model, achieving competitive results across sequencing methods and downstream tasks.

DOI 10.1101/2025.08.05.668822

DNA methylationwhole-genome sequencing

𝕏 PostBluesky