Kurt Boonen

The paper trains a deep learning model to predict fragment ion intensities, improving immunopeptide identification rates using timsTOF instruments.

The paper reanalyzes public mass spectrometry data to identify post-translational modifications in SARS-CoV-2-host protein interactions, revealing novel modification sites and their potential functional roles.

The paper presents a comprehensive benchmark dataset for evaluating label-free quantification methods across various proteomics acquisition strategies.