David Pellow

Efficient minimizer orders for large values of k using minimum decycling sets

The paper introduces new minimizer orders for large k-values using decycling sets, improving efficiency in DNA sequencing analysis.

Parameterized syncmer schemes improve long-read mapping

This paper introduces parameterized syncmer schemes for long-read mapping, showing they reduce unmapped and incorrectly mapped reads compared to existing methods.

Dataset-adaptive minimizer order reduces memory usage in k-mer counting

The paper introduces a dataset-adaptive minimizer order method to reduce memory usage in k-mer counting with minimal runtime increase.

SCAPP: An algorithm for improved plasmid assembly in metagenomes

SCAPP improves plasmid assembly in metagenomes by integrating biological knowledge, outperforming existing tools on simulated and real datasets.

PlasClass improves plasmid sequence classification

PlasClass improves plasmid sequence classification by outperforming existing tools on shorter sequences in metagenomic assemblies.

Improving the performance of minimizers andwinnowing schemes

The paper improves minimizers and winnowing schemes by analyzing k-mer ordering and introducing universal hitting sets to enhance performance.