Author

Dan Flomin

Tel Aviv UniversityORCID 0000-0002-1911-7298Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:dimensionality reduction· 1 Research Focus:genome assembly· 1 Approach:optimal transport· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Ron Shamir AiD· 2 shared David PellowiD· 1 shared Lianrong PuiD· 1 shared Yael Ben-Ari· 1 shared Yaron OrensteiniD· 1 shared

Activity by Year

2021-2022 · peak 1/yr

Co-Author Collaboration Network

5 top collaborators · 7 mutual co-author links

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2 shared papersBioinformatics

Ron Shamir AORCID

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2 papers

Recent·Most cited

BioinformaticsJournal of Computational BiologyPeer-reviewedMay 8, 2022

Dataset-adaptive minimizer order reduces memory usage in k-mer counting

Dan Flomin, David Pellow, Ron Shamir A

The paper introduces a dataset-adaptive minimizer order method to reduce memory usage in k-mer counting with minimal runtime increase.

5 citations

whole-genome sequencingstatistical model

𝕏 PostBluesky

BioinformaticsACM International Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM-BCB)Peer-reviewedJul 30, 2021

Improving the efficiency of de Bruijn graph construction using compact universal hitting sets

Yael Ben-Ari, Dan Flomin, Lianrong Pu…·Ron Shamir A

The paper demonstrates that using universal hitting sets improves de Bruijn graph construction efficiency by reducing runtime and memory usage in genome assembly.

3 citations

whole-genome sequencingstatistical model

𝕏 PostBluesky