Fernando Puente‐Sánchez

The paper identifies bacteria involved in non-sulfate-based hydrogen sulfide production in aquaculture systems and compares their activity with sulfate-reducing bacteria.

This paper introduces SuperPang, an algorithm for generating non-redundant pangenome assemblies from diverse genomes, enabling analysis of intra-species diversity in Polynucleobacter.

M&Ms generates realistic amplicon datasets for microbial communities using ecological parameters, aiding in bioinformatic tool testing and benchmarking.

SQMtools provides an automated workflow for processing and visualizing 'omics data using R and anvi'o, enabling non-experts to generate custom plots from raw sequencing reads.

The paper evaluates taxonomic and functional annotation methods for metagenomes, finding that database completeness and sequencing depth significantly affect performance.

SqueezeMeta is a metagenomic analysis pipeline that automates all steps of metagenome and metatranscriptome analysis, enabling efficient and portable processing of microbiome data.