Author

Nikos Darzentas

Central European Institute of Technology – Masaryk UniversityORCID 0000-0002-6365-7515Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 2 Genomics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 3 Organism:plant (other)· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Alexandros BousiosiD· 2 shared Brandon S. GautiD· 2 shared Adam Krejčí· 1 shared Aline MuyleiD· 1 shared Boris TichýiD· 1 shared Danelle K. SeymouriD· 1 shared Elias PrimetisiD· 1 shared Evangelia StalikaiD· 1 shared

Activity by Year

2017-2020 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenomics

Alexandros BousiosORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

GenomicsMolecular PlantPeer-reviewedNov 7, 2020

Gene capture by transposable elements leads to epigenetic conflict in maize

Aline Muyle, Danelle K. Seymour, Nikos Darzentas…·Alexandros Bousios

The paper investigates epigenetic conflict in maize caused by transposable elements capturing gene fragments, showing that captured genes are more methylated and targeted by siRNAs, while translocated genes show signs of silencing and pseudogenization.

34 citations

plant (other)DNA methylation

𝕏 PostBluesky

BioinformaticsBioinformaticsPeer-reviewedJul 12, 2017

GLASS: assisted and standardized assessment of gene variations from Sanger sequence trace data

Karol Pál, Vojtěch Bystrý, Tomáš Reigl…·Nikos Darzentas

GLASS standardizes variant assessment from Sanger sequencing data, providing consistent output aligned with HGVS nomenclature.

11 citations

long-read sequencingstatistical model

𝕏 PostBluesky

BioinformaticsMobile DNAPeer-reviewedFeb 15, 2017

Considerations and complications of mapping small RNA libraries to transposable elements

Alexandros Bousios, Brandon S. Gaut, Nikos Darzentas

The paper examines challenges in mapping small RNA libraries to transposable elements in maize, highlighting methodological considerations and their impact on TE age analysis.

12 citations

plant (other)bulk RNA-seq

𝕏 PostBluesky