Author

Jingrui He

University of Illinois Urbana-ChampaignORCID 0000-0002-6429-6272Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1

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Research Focus:batch correction / integration· 1 Research Focus:cell type annotation· 1 Approach:contrastive learning· 1 Approach:deep learning· 1 Assay:scRNA-seq· 1

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Fatemeh AminzadehiD· 1 shared Fatemeh VafaeeiD· 1 shared Jun WuiD· 1 shared Morteza SaberiiD· 1 shared

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2024-2024 · peak 1/yr

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4 top collaborators · 6 mutual co-author links

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1 shared paperBioinformatics

Fatemeh AminzadehORCID

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1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintOct 4, 2024

Single-Cell Data Integration and Cell Type Annotation through Contrastive Adversarial Open-set Domain Adaptation

Fatemeh Aminzadeh, Jun Wu, Jingrui He…·Fatemeh Vafaee

SAFAARI integrates single-cell data, corrects batch effects, and annotates cell types using contrastive adversarial domain adaptation, outperforming existing methods in multiple benchmarks.

DOI 10.1101/2024.10.04.616599

scRNA-seqcontrastive learning

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