Anna Korsakova

Borzoi-informed fine mapping improves causal variant prioritization in complex trait GWAS

Sniff improves causal variant prioritization in GWAS by integrating Borzoi-predicted variant effects with functional annotations, identifying more fine-mapped variants with higher posterior inclusion probabilities.

Shift augmentation improves DNA convolutional neural network indel effect predictions

This paper improves DNA CNNs' ability to predict indel effects on gene regulation by addressing technical variance through shift augmentation and introduces an interpretation technique validated with experimental data.

Prediction of G4 formation in live cells with epigenetic data: a deep learning approach

The paper develops a deep learning model, epiG4NN, to predict G4 formation in live cells using epigenetic data, showing its effectiveness across different cell lines.