Author

Luong Ruiz

Calico Life Sciences

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Genetic & Genomic Medicine· 2 Genetics· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 4 Assay:GWAS summary statistics· 3 Organism:human· 3 Research Focus:GWAS / association mapping· 2 Research Focus:benchmarking· 1 Approach:deep learning· 1 Research Focus:fine-mapping· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Ahna Reza Girshick· 2 shared Asher K. Haug-Baltzell· 2 shared Brooke L. RheadiD· 2 shared Catherine A. Ball· 2 shared Eurie L. HongiD· 2 shared Harendra GuturuiD· 2 shared Keith Noto· 2 shared Kristin A. RandiD· 2 shared

Activity by Year

2022-2025 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenetic & Genomic Medicine

Ahna Reza Girshick

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Borzoi-informed fine mapping improves causal variant prioritization in complex trait GWAS

Divyanshi Srivastava, Anna Korsakova, Qingbo Wang, Luong Ruiz, Han Yuan, David R. Kelley

Sniff improves causal variant prioritization in GWAS by integrating Borzoi-predicted variant effects with functional annotations, identifying more fine-mapped variants with higher posterior inclusion probabilities.

bioRxiv · Jul 9, 2025 · PreprintGenetics

Accurate Genome-Wide Phasing from IBD Data

Keith Noto, Luong Ruiz

This paper introduces a method to accurately phase entire genomes using IBD segments from distant cousins, achieving 98% median accuracy in a test set of 30,000 individuals.

BMC Bioinformatics · Nov 23, 2022Peer-reviewedGenetics

Mapping the human genetic architecture of COVID-19: an update

COVID-19 Host Genetics Initiative, Leadership, Gita A. Pathak, Juha M Karjalainen, Christine R. Stevens, Benjamin M. Neale, Mark J. Daly, Andrea Ganna, Writing group, Writing group lead, Shea J. Andrews, Masahiro Kanai, Mattia Cordioli, Analysis group, Manuscript analyses team lead, , David Morrison

This study updates the genetic architecture of COVID-19 by adding 11 new genome-wide significant loci through a large GWAS meta-analysis.

Nature · Aug 3, 2022Peer-reviewedGenetic & Genomic Medicine

Novel COVID-19 phenotype definitions reveal phenotypically distinct patterns of genetic association and protective effects

Genevieve H. L. Roberts, Raghavendran Partha, Brooke L. Rhead, Spencer C. Knight, Danny S. Park, Marie V. Coignet, Miao Zhang, Nathan Berkowitz, David A. Turissini, Michael Gaddis, Shannon McCurdy, Milos Pavlovic, Luong Ruiz, Chodon Sass, AncestryDNA Science Team, , Kristin A. Rand

The paper defines novel COVID-19 phenotypes and shows they reveal distinct genetic associations and protective effects compared to traditional definitions.

Nature Genetics · Apr 1, 2022Peer-reviewedGenetic & Genomic Medicine