Chris Mungall

The paper improves similarity calculations in phenotype ontologies by incorporating opposite class information, showing significant improvements in cosine similarity measures.

The paper outlines ten lessons for designing, provisioning, and reusing persistent identifiers to improve data integration in life sciences.

BioMake improves upon GNU Make by adding cluster support, MD5 signatures, and Prolog extensions for better bioinformatics workflow management.

WTFgenes provides a static web tool for gene set analysis using hypergeometric and model-based methods, running in the browser without server resources.

The paper describes the Monarch Initiative, a platform that integrates multimodal data across species to enhance genotype-phenotype analysis and precision medicine.

The paper formalizes genomic interval relations and presents an algebra for operations on these intervals to enhance informatics methods for genomics data.