Author

Peter R. Cook

University of OxfordORCID 0000-0002-6639-188XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:ChIP-seq· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Approach:statistical model· 1

Frequent Co-Authors

Davide MarenduzzoiD· 1 shared Francisco BerkemeieriD· 1 shared Michael A. BoemoiD· 1 shared Zahra ValeiiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

4 top collaborators · 2 mutual co-author links

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1 shared paperBiophysics

Davide MarenduzzoORCID

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2 papers

Recent·Most cited

BiophysicsbioRxivPreprintMay 14, 2026

Towards a database capturing chromosome structure and function: symbols and syntax

Peter R. Cook, Davide Marenduzzo, Zahra Valei

The paper introduces a database format called strion to capture chromosome structure and function by encoding transcription unit activity and interactions across cells and time.

DOI 10.64898/2026.05.14.724942

humandeep learning

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Systems BiologyNature CommunicationsPeer-reviewedMay 19, 2025

DNA replication timing reveals genome-wide features of transcription and fragility

Francisco Berkemeier, Peter R. Cook, Michael A. Boemo

The paper develops a high-resolution mathematical model to map replication timing profiles across cell lines, revealing correlations between replication dynamics, transcription, and chromatin structure.

11 citations

humanDNA methylation

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