Author

Markus Joppich

Ludwig-Maximilians-Universität MünchenORCID 0000-0002-6665-8951Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:benchmarking· 2 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Rafael KramanniD· 1 shared Ralf ZimmeriD· 1 shared S. KleiniD· 1 shared Sikander HayatiD· 1 shared

Activity by Year

2024-2025 · peak 2/yr

Co-Author Collaboration Network

4 top collaborators · 2 mutual co-author links

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1 shared paperBioinformatics

Rafael KramannORCID

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3 papers

Recent·Most cited

PLO(SC)2: Plots and Scripts for scRNA-seq analysis

PLO(SC)2 provides plotting and analysis scripts for scRNA-seq data using Seurat, enabling streamlined analysis and enhanced visualizations for complex datasets.

bioRxiv · Mar 9, 2025 · PreprintBioinformatics

Text Mining miRNA-gene Interactions for the mx-plore Platform

Markus Joppich, S. Klein, Ralf Zimmer

The paper introduces mx-plore, a database of miRNA-gene interactions derived from text mining, providing context-specific information from scientific publications.

bioRxiv · Jan 22, 2025 · PreprintBioinformatics

PICASO: Profiling Integrative Communities of Aggregated Single-cell Omics data

Markus Joppich, Rafael Kramann, Sikander Hayat

PICASO integrates single-cell gene expression data with biomedical databases to create networks that compare disease states and identify druggable targets.

bioRxiv · Aug 28, 2024 · PreprintBioinformatics