Author

Shayana Saravanakumar

Institute for Bioscience and Biotechnology ResearchORCID 0000-0002-6741-5943Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:benchmarking· 2 Approach:deep learning· 1 Assay:protein structure· 1 Approach:statistical model· 1

Frequent Co-Authors

Brian G. PierceiD· 2 shared Aurélien PélissieriD· 1 shared Binbin CheniD· 1 shared Bjoern PetersiD· 1 shared Chengkai Xiao· 1 shared Coos A. B. BaakmaniD· 1 shared Damon MayiD· 1 shared Danielle Diepenbroek· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Brian G. PierceORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Benchmarking AlphaFold and related deep learning approaches for modeling antibody and TCR antigen recognition

Rui Yin, Shayana Saravanakumar, Shu Yuan Shi, Minjae Park, Valerie Lin, Jessica Lee, Melyssa Cheung, Nathaniel R. Felbinger, Sivan Kaufman, Maya Eisenberg, Brian G. Pierce

This study benchmarks AlphaFold and related methods for modeling antibody and TCR antigen recognition, showing improvements with AlphaFold3 and increased sampling but varying success across complex types.

bioRxiv · Jul 6, 2026 · PreprintBioinformatics

IMMREP25: Unseen Peptides

Eve Richardson, Yannick Jurriaan Maria Aarts, John A. Altin, Coos A. B. Baakman, Philip H Bradley, Binbin Chen, Joakim Nøddeskov Clifford, Manjima Dhar, Danielle Diepenbroek, Ethan Fast, Ragul Gowthaman, Jieling He, Vadim K Karnaukhov, Dario F. Marzella, Pieter Meysman, , Bjoern Peters

IMMREP25 evaluates TCR:pMHC binding prediction for unseen peptides, showing improved performance with structural modeling but still below random guessing.

bioRxiv · Apr 1, 2026 · PreprintBioinformatics