Benchmarking AlphaFold and related deep learning approaches for modeling antibody and TCR antigen recognition
Rui Yin, Shayana Saravanakumar, Shu Yuan Shi, Minjae Park, Valerie Lin, Jessica Lee, Melyssa Cheung, Nathaniel R. Felbinger, Sivan Kaufman, Maya Eisenberg, Brian G. Pierce
This study benchmarks AlphaFold and related methods for modeling antibody and TCR antigen recognition, showing improvements with AlphaFold3 and increased sampling but varying success across complex types.
bioRxiv · Jul 6, 2026 · PreprintBioinformatics