Pangenome graph layout by Path-Guided Stochastic Gradient Descent
Simon Heumos, Andrea Guarracino, Jan-Niklas M. Schmelzle, Jiajie Li, Zhiru Zhang, Jörg Hagmann, Sven Nahnsen, Pjotr Prins, Erik P. Garrison
This paper introduces a graph layout algorithm for pangenome graphs, enabling efficient visualization of large-scale genomic data.
bioRxiv · Sep 22, 2023 · PreprintBioinformatics